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Species belonging to selected taxon:

Solanum melongena



ABOUT THIS RECORD

ID: MNEST002667
species: Solanum melongena
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTGTTCTCAGGTCGCCCCTG

miRNA*
GGGGCAACTTGAGATCACATG

mismatches: 2
bulges: 0

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pre-miRNA
GAATCTTCTAATATTGGTGGAAGTATTCAATAGGGGCAACTTGAGATCACATGTTATTTTTTTTTTTTTCTGATGATTCTATATTTCTAACATGTGTTCT
CAGGTCGCCCCTG
TCGAATTATTTTTTCACCTAATAATGAAT


dot-bracket secondary structure
.....(((...((((((((((((.((((.((((((((.((((((((.(((((((((...............................))))))))).)))
))))).)))))))
).))))....)))))))).))))..))).



SIMILARITIES
miRBase ptc-MIR398c: 0.0000004

PMRD ptc-miR398c: 0.0000004

microPC miR398: 0.0000004
UniProt no hits

RFAM MIR398: 0.000008
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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